Interesting project, what kind of genome sesuencing are you planning on doing? Whole genome, transcriptome, AFLP? I started a similar project a few years ago, but things at the lab got too busy and I had to put it on the back burner. You have me thinking I should start it up again. I do have DNA samples from about 20 plants that I could share if you do not need too much.
Cheers,
Richard